The Future of Microbiome Sequencing Service Is Here
Unrivalled End-to-End Solutions for Your Unique Microbiome Needs:
From Scientific Discovery and Clinical Applications to Commercial Testing
Microbiome Sequencing Service Offerings:
Complete Analysis Solutions for the Most Accurate Microbiome Profiling

16S/ITS Amplicon Sequencing

Full-Length 16S Sequencing

Shotgun Metagenomic Sequencing

Metatranscriptomic Sequencing

Custom Solutions for Industry Partners

Long-Read Metagenome Sequencing & Assembly
Long-Read Bacterial Whole Genome Assembly
Trusted By Leading Institutions
We are honored to have collaborated and provided next-generation analysis services with the most prestigious institutions, agencies and companies in the world.
Microbiome NGS Services Trial Program
We’re excited to introduce Zymo Research’s Microbiome NGS Services Trial Program—offering $350 in free credit to new customers. Choose between our 16S rRNA or Shotgun Metagenomic Sequencing services—trusted for industry-leading turnaround time, accuracy, and data quality. Redeem your credit and access your results seamlessly through our NGS Service Portal.
Program Details:
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Choose one of our trusted microbiome sequencing services:
- 16S rRNA or ITS Targeted Amplicon Sequencing
(V1-V2, V1-V3, V3-V4, ITS2) - Shotgun Metagenomics
(up to 3Gb/sample)
- 16S rRNA or ITS Targeted Amplicon Sequencing
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Access your data through NGS Service Portal
$350 FREE CREDIT
Disclaimer: This program is valid for direct U.S. customers only and cannot be combined with other offers. This promo is one-time use only. Eligibility is limited to Zymo Research’s new microbiome services customers. Each new customer may claim only one trial. This program is valid until 12/31/2025. Program duration and incentive are subjected to change at Zymo Research’s sole discretion. Additional restrictions may apply.
Discover the New NGS Service Portal
Say goodbye to endless email chains and complicated ordering processes. Tailored for researchers, our new NGS Service Portal streamlines your experience into one intuitive interface – you can request services in minutes, modify orders as needed, track progress in real time, and focus on what matters most: your discoveries.
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Potential Industries & Applications



Testimonials from Our Customers
Exploring the Microbial World
Over the last century, microbiologists have primarily used culturing and plating techniques to identify and study bacteria. However, many microbes cannot be studied using traditional microbiology techniques because they cannot be isolated and cultured. Today, high-throughput next-generation sequencing (NGS) allows us to study these unculturable microbes in community states. High-throughput sequencing techniques are pushing the field of microbiome analysis to an exciting new age. With new sequencing techniques, microbiologists are embracing a golden time of fascinating discoveries.
Although NGS is now a standard tool in the field of microbiome analysis services, it is a long and complicated process with many permutations. Small missteps in any step can cause significant errors, while choosing the wrong method may produce suboptimal results. Worse, as with many novel technologies, many NGS methods introduce huge bias, leading to concerns about data quality at-scale.
Over the past few years, Zymo Research has devoted tremendous efforts to improving the accuracy of microbiome quantification. Our microbiome analysis services offer a high-fidelity pipeline with complete solutions for any application. Furthermore, we use the worlds first commercial mock community microbiome standard for quality control. Sample collection devices are also available for unbiased sample storage and transport. Our robust bioinformatics pipelines amplify the benefits from these tools, improving the resolution and accuracy of taxonomy prediction.
Whether you need 16S rRNA Sequencing, ITS Sequencing, Amplicon Sequencing, Metagenomic Shotgun Sequencing, or another custom sequencing solution, our microbiome analysis service team can take you from any stage of your project to a comprehensive microbiome report featuring publication-ready data.